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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11279859_11281317_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11279859 - 11281317
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATTTTCTTAACA
Flanking Amino Acid:
AFIAAFSSFLRYWPYGSDGC
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.5
35.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
76.1
0.59
1.1
72.2
42.7
Minor 5ss
55
0.17
2.5
74.6
41.7
Minor BPS
87.1
1.16
0.9
89.52
25.5

Associated Gene:

Gene:
RGR
Ensembl Gene ID:
ENSAPLG00000011960
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012458
11276585 - 11291277
14693