About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11281440_11288789_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11281440 - 11288789
Intron Length:
7350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
CCTTCCCAAGCC
Flanking Amino Acid:
AWDRYHHYCTRSKLQWSTAI
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
79.7
33.7
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
81.6
0.71
0.7
77.1
24.9
Minor 5ss
36.9
-1.5
3.8
55.6
43.2
Minor BPS
45.3
-0.3
2.2
58.55
46.3

Associated Gene:

Gene:
RGR
Ensembl Gene ID:
ENSAPLG00000011960
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012458
11276585 - 11291277
14693