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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11288944_11289449_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11288944 - 11289449
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TAACCCTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCCCTTCTAACC
Flanking Amino Acid:
CCTLDYSKGDRNYITFLFAL
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.4
0.51
0.9
62.6
39.1
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
49.7
-0
1.7
59.44
40.1

Associated Gene:

Gene:
RGR
Ensembl Gene ID:
ENSAPLG00000011960
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012458
11276585 - 11291277
14693