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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11289568_11291085_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11289568 - 11291085
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TGGTTGTGAAAC
Flanking Amino Acid:
QKFKKTGHHKFNTGLPLKTL
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
88
0.85
0.8
80.2
37.3
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
45
-0.4
2.2
56.85
41.4

Associated Gene:

Gene:
RGR
Ensembl Gene ID:
ENSAPLG00000011960
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012458
11276585 - 11291277
14693