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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11330103_11332266_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11330103 - 11332266
Intron Length:
2164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAG
U12 Branch Point Sequence:
CTAGCTCTAAGA
Flanking Amino Acid:
EERREKTTNWVFNYWLDDMY
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
58.2
0.2
1.5
67.3
37.8
Major PPT
79
0.65
0.7
77
25
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
45.7
-0.3
2
56.12
43.3

Associated Gene:

Gene:
CHAT
Ensembl Gene ID:
ENSAPLG00000012172
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012722
11326987 - 11362705
35719