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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11333881_11336623_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11333881 - 11336623
Intron Length:
2743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTCTTC
Flanking Amino Acid:
GVQDYKALLDTHALPVDFAR
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1.2
81.4
32.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
85
0.79
0.7
77
31.7
Minor 5ss
37.4
-1.4
2.7
45
36
Minor BPS
44.7
-0.4
3.6
73.26
38.6

Associated Gene:

Gene:
CHAT
Ensembl Gene ID:
ENSAPLG00000012172
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012722
11326987 - 11362705
35719