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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11337980_11344485_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11337980 - 11344485
Intron Length:
6506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCAGC
5'SS Class:
major
3'SS Sequence:
CTTTTATCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACTCTTTTATCT
Flanking Amino Acid:
WAEARTILMKDSTNRDSLDM
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
68.3
42.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.9
0.81
0.8
77.8
35.6
Minor 5ss
36.1
-1.6
2.7
44.3
43.1
Minor BPS
56.2
0.27
1.6
70.88
40.5

Associated Gene:

Gene:
CHAT
Ensembl Gene ID:
ENSAPLG00000012172
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012722
11326987 - 11362705
35719