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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11344656_11346690_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11344656 - 11346690
Intron Length:
2035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TCTCCTTTACTT
Flanking Amino Acid:
ANRWYDKPMQFVVGRDGVCG
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.9
33.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
72.8
0.51
0.8
72.8
30.9
Minor 5ss
34.1
-1.8
3
44.4
43.1
Minor BPS
62
0.46
1.6
76.64
40.8

Associated Gene:

Gene:
CHAT
Ensembl Gene ID:
ENSAPLG00000012172
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012722
11326987 - 11362705
35719