About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11346792_11346977_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11346792 - 11346977
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CACATACTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
TTTTCTCTCACA
Flanking Amino Acid:
VQCTEHLLKHMKESSKKLVR
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.9
37.3
Major BPS
67
0.42
1.1
57.7
39
Major PPT
61.8
0.27
1
54.9
38.9
Minor 5ss
32.5
-2
2.9
41.7
37.6
Minor BPS
60.1
0.31
2.1
79.78
36.5

Associated Gene:

Gene:
CHAT
Ensembl Gene ID:
ENSAPLG00000012172
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012722
11326987 - 11362705
35719