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Intron Name: Anas_platyrhynchos_platyrhynchos_6_11347107_11348277_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11347107 - 11348277

Intron Length:

1171

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCACAT

5'SS Class:

major

3'SS Sequence:

ACTTGTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGTAAC

U12 Branch Point Sequence:

ACTGCCTCTACT

Flanking Amino Acid:

HLASSAEKLQRMVKNLDFIT

Intron Amino Acid Position:

396

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.6

0.42

1.2

62.5

43.8

Major BPS

59.3

0.23

1.3

61.4

43.2

Major PPT

0.72

0.9

73.1

41.5

Minor 5ss

37.8

-1.4

3.5

48.1

Minor BPS

50.5

0.1

70.59

Associated Gene:

Gene:

CHAT

Ensembl Gene ID:

ENSAPLG00000012172

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012722

11326987 - 11362705

35719