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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11350063_11353212_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11350063 - 11353212
Intron Length:
3150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTTGG
5'SS Class:
major
3'SS Sequence:
ATTCCCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTCCCCCAACA
Flanking Amino Acid:
AMIDDKPALSDSEKMQRFKD
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
62.7
44.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
69.5
0.44
0.9
63.5
32.2
Minor 5ss
46.2
-0.4
2.5
58.1
46.4
Minor BPS
56.2
0.19
1.9
73.13
37.8

Associated Gene:

Gene:
CHAT
Ensembl Gene ID:
ENSAPLG00000012172
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012722
11326987 - 11362705
35719