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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11353276_11357071_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11353276 - 11357071
Intron Length:
3796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
ACTCAGTTAACT
Flanking Amino Acid:
IAAQTNYTILAITGMAIDNH
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
67.8
0.4
1
61.7
43.2
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
50.6
0.1
2.2
72.93
43.5

Associated Gene:

Gene:
CHAT
Ensembl Gene ID:
ENSAPLG00000012172
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012722
11326987 - 11362705
35719