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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11357210_11358946_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11357210 - 11358946
Intron Length:
1737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
CACTCCTTACCT
Flanking Amino Acid:
SNRFILSTSQVPTTMEMFCC
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
68.7
0.42
0.9
60.8
39.3
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
66.3
0.59
1.7
76.7
45.7

Associated Gene:

Gene:
CHAT
Ensembl Gene ID:
ENSAPLG00000012172
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012722
11326987 - 11362705
35719