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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11365038_11366005_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11365038 - 11366005
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TACTTCCTAAGT
Flanking Amino Acid:
FRCNINELDFGGDGKLDPLC
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.3
37.4
Major BPS
79.2
0.72
1
75
40
Major PPT
87
0.83
0.6
86.1
20.7
Minor 5ss
39.8
-1.1
2.8
47
42.5
Minor BPS
53.3
0.18
2
73.21
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022667
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037007
11364436 - 11366070
1635