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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1139246_1145012_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1139246 - 1145012
Intron Length:
5767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTCC
5'SS Class:
major
3'SS Sequence:
TTTCTGATGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTATATTATTT
Flanking Amino Acid:
MQSAHSDFIVRLYRTFKDSK
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.5
39.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
68.6
0.42
1
62.9
43
Minor 5ss
37
-1.5
3.4
51.5
45.2
Minor BPS
49.1
0.01
1.9
70.35
40.6

Associated Gene:

Gene:
PRKG1
Ensembl Gene ID:
ENSAPLG00000003140
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003222
738722 - 1157771
419050