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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11397626_11399997_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11397626 - 11399997
Intron Length:
2372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CAACTCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTGTTTTAACA
Flanking Amino Acid:
SGQDVERGTFSHRHHVLHDQ
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.7
0.58
0.9
69.1
36.3
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
69.5
0.61
1.3
73.92
38.7

Associated Gene:

Gene:
OGDHL
Ensembl Gene ID:
ENSAPLG00000012565
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040245
11377133 - 11427833
50701
ENSAPLT00000013088
11377133 - 11427833
50701