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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11402805_11403539_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11402805 - 11403539
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTTCCCTGAACT
Flanking Amino Acid:
IKHWLDSPWPGFFNVDGEPK
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
74.3
34.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
86.3
0.82
0.8
78
35.4
Minor 5ss
33.2
-1.9
3.4
45.7
43.4
Minor BPS
74.7
0.85
1.4
87.98
36.2

Associated Gene:

Gene:
OGDHL
Ensembl Gene ID:
ENSAPLG00000012565
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040245
11377133 - 11427833
50701
ENSAPLT00000013088
11377133 - 11427833
50701