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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11404375_11404634_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11404375 - 11404634
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTCCATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTCTTTACCA
Flanking Amino Acid:
TFNKDVVVDLVCYRRRGHNE
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.3
37.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.5
0.73
0.7
77.9
29.6
Minor 5ss
42
-0.9
3.1
61
38.4
Minor BPS
70.3
0.63
1.6
78.6
38.6

Associated Gene:

Gene:
OGDHL
Ensembl Gene ID:
ENSAPLG00000012565
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013088
11377133 - 11427833
50701