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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11404375_11405210_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11404375 - 11405210
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTCTTTACCA
Flanking Amino Acid:
GTIHVVVNNQVCYRRRGHNE
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.8
38.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.5
0.73
0.7
77.9
29.6
Minor 5ss
33.9
-1.8
2.9
44.3
43
Minor BPS
70.3
0.63
1.6
78.6
38.6

Associated Gene:

Gene:
OGDHL
Ensembl Gene ID:
ENSAPLG00000012565
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040245
11377133 - 11427833
50701