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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11406854_11407457_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11406854 - 11407457
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGTCA
5'SS Class:
major
3'SS Sequence:
TGGATTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TGTGTTTGGATT
Flanking Amino Acid:
IEYVIMGMPHRGRLNVLANV
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.9
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
75.7
0.58
0.9
73.6
41.7
Minor 5ss
37.1
-1.5
3.2
48.4
47.2
Minor BPS
49
0
1.5
67.14
38.3

Associated Gene:

Gene:
OGDHL
Ensembl Gene ID:
ENSAPLG00000012565
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040245
11377133 - 11427833
50701
ENSAPLT00000013088
11377133 - 11427833
50701