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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11414891_11421827_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11414891 - 11421827
Intron Length:
6937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TATTCCTTTATT
Flanking Amino Acid:
AVQSLIRAYQIRGHHVAQLD
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
75.1
0.62
1
65.6
41
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
76.3
0.91
1.5
89.12
35.3

Associated Gene:

Gene:
OGDHL
Ensembl Gene ID:
ENSAPLG00000012565
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040245
11377133 - 11427833
50701
ENSAPLT00000013088
11377133 - 11427833
50701