About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11426_12182_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11426 - 12182
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TTTCACTCATCT
Flanking Amino Acid:
NYKSQHLQLQVIPVPLDCTS
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
77.9
0.63
0.7
68.9
31.6
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
52.7
0.16
2
79.33
42.1

Associated Gene:

Gene:
CWF19L1
Ensembl Gene ID:
ENSAPLG00000011370
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027241
21 - 14383
14363
ENSAPLT00000011862
1176 - 14383
13208