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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11445372_11446167_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11445372 - 11446167
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
TFLCEKGQTVGDIYRLLLRY
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
75.8
35.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.3
0.73
1
87.2
30.4
Minor 5ss
37.7
-1.4
3
45.4
43.9
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
PARG
Ensembl Gene ID:
ENSAPLG00000013100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013640
11445205 - 11504239
59035