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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11446297_11450121_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11446297 - 11450121
Intron Length:
3825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTCTGTTATT
Flanking Amino Acid:
GAFGGDSRLKALIQILAAAE
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
83.9
0.76
0.8
81.4
34.9
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
55.4
0.25
2.3
83.31
38.3

Associated Gene:

Gene:
PARG
Ensembl Gene ID:
ENSAPLG00000013100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013640
11445205 - 11504239
59035