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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11450228_11453920_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11450228 - 11453920
Intron Length:
3693

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ATCTTCTGACTC
Flanking Amino Acid:
PEKIRRELNKAYCGFSRPNV
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.8
83.4
32.1
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
76.8
0.6
0.9
69.9
36.6
Minor 5ss
22.2
-3.2
3.8
33
42.4
Minor BPS
49.6
-0
1.7
60.69
39.2

Associated Gene:

Gene:
PARG
Ensembl Gene ID:
ENSAPLG00000013100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013640
11445205 - 11504239
59035