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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11454030_11455002_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11454030 - 11455002
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCAAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCCTCCAAATT
Flanking Amino Acid:
WARSHEDKTPRDEWQRRYTE
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
76.3
33.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
63
0.29
0.9
59.8
34.7
Minor 5ss
40.6
-1
3.4
58.3
46.6
Minor BPS
47.8
-0
2
69.25
42.2

Associated Gene:

Gene:
PARG
Ensembl Gene ID:
ENSAPLG00000013100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013640
11445205 - 11504239
59035