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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11461148_11462456_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11461148 - 11462456
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TATCTCTTAATC
Flanking Amino Acid:
IEGNGQGMLQVDFANRFVGG
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
73.1
0.52
1
74.2
40.7
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
74.4
0.74
1.1
76.79
32.6

Associated Gene:

Gene:
PARG
Ensembl Gene ID:
ENSAPLG00000013100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013640
11445205 - 11504239
59035