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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11462533_11463172_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11462533 - 11463172
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCAATGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTTTCCTCAATG
Flanking Amino Acid:
QSLQEFPDWERSQKKLSRLH
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
62.5
0.28
1
58.3
36.2
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
75.6
0.66
1.5
79.83
36.5

Associated Gene:

Gene:
PARG
Ensembl Gene ID:
ENSAPLG00000013100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013640
11445205 - 11504239
59035