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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11463234_11465044_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11463234 - 11465044
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTCTT
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
FCYFRRVTEKKPTGLVTFTR
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
77.4
37.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
79.2
0.66
0.9
73.9
36.8
Minor 5ss
41.9
-0.9
3.1
59.7
38.7
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
PARG
Ensembl Gene ID:
ENSAPLG00000013100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013640
11445205 - 11504239
59035