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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11477348_11493208_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11477348 - 11493208
Intron Length:
15861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAA
5'SS Class:
major
3'SS Sequence:
CCCTCTTGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAAAA
Flanking Amino Acid:
FTALTDFCDKVLEDAEAQHL
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
67.5
39.6
Major BPS
100
1.24
0.5
100
0
Major PPT
63.7
0.31
0.9
60.8
33.9
Minor 5ss
36.5
-1.5
3.1
47
48.3
Minor BPS
67.4
0.54
1.7
81.52
33

Associated Gene:

Gene:
PARG
Ensembl Gene ID:
ENSAPLG00000013100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013640
11445205 - 11504239
59035