About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11493284_11495339_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11493284 - 11495339
Intron Length:
2056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TCTGCTTTATTT
Flanking Amino Acid:
NKFTCSHDLKEAILRYNVAY
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
77.5
0.62
0.8
71.8
32.8
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
59.4
0.37
1.7
74.81
43.2

Associated Gene:

Gene:
PARG
Ensembl Gene ID:
ENSAPLG00000013100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013640
11445205 - 11504239
59035