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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11495424_11495887_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11495424 - 11495887
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTGTTTTAAAG
Flanking Amino Acid:
EQNLYPVEDENGDRTAGSRW
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
81
0.7
1
82.2
33.3
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
62.1
0.24
1.6
67.62
40.4

Associated Gene:

Gene:
PARG
Ensembl Gene ID:
ENSAPLG00000013100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013640
11445205 - 11504239
59035