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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11497446_11500755_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11497446 - 11500755
Intron Length:
3310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGTTT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTTGTTTTAACA
Flanking Amino Acid:
FMRIPKIEEKSRKEKCEFKP
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
72.3
39.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
84.2
0.77
0.9
81
35.4
Minor 5ss
41.3
-1
3.7
64.1
47.4
Minor BPS
75.7
0.8
1.2
82.25
33.1

Associated Gene:

Gene:
PARG
Ensembl Gene ID:
ENSAPLG00000013100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013640
11445205 - 11504239
59035