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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11501731_11504172_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11501731 - 11504172
Intron Length:
2442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
AAGACATTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
39.2
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
84.1
0.77
0.7
79.7
25.9
Minor 5ss
36.4
-1.5
3.4
50.2
46.4
Minor BPS
52.3
0.15
1.8
67.6
42.1

Associated Gene:

Gene:
PARG
Ensembl Gene ID:
ENSAPLG00000013100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013640
11445205 - 11504239
59035