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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11508583_11508783_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11508583 - 11508783
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTGGTAACGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTTGTCCATT
Flanking Amino Acid:
FFTIGGCCMTGAAFGALNGL
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
56.8
0.15
1.1
48.2
44
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
43.3
-0.4
2.5
66.82
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013120
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013670
11508429 - 11522791
14363