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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11508869_11511200_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11508869 - 11511200
Intron Length:
2332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
AACTCCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TACCTTTTAAAC
Flanking Amino Acid:
NMAWSKPRNVQILNMVTRQG
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.7
0.53
0.9
65.6
35.1
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
56.9
0.2
1.4
61.68
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013120
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013670
11508429 - 11522791
14363