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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11511260_11513770_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11511260 - 11513770
Intron Length:
2511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GCTTTCTTAATG
Flanking Amino Acid:
ALWANTLGSLALLYSAFGVV
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
88.9
0.88
0.7
81.3
35.7
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
71.1
0.52
1.3
67.31
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013120
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013670
11508429 - 11522791
14363