About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1151830_1152871_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1151830 - 1152871
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GCTTTATTATTC
Flanking Amino Acid:
KNGVKDIQKHKWFEGFNWEG
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.3
0.68
0.7
72.9
32
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
48.8
-0.1
1.8
59.48
40

Associated Gene:

Gene:
PRKG1
Ensembl Gene ID:
ENSAPLG00000003140
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003222
738722 - 1157771
419050