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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11529118_11529422_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11529118 - 11529422
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTATCCGTAATT
Flanking Amino Acid:
DKWLLRKKAQEFGLPTVCDL
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.6
40.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.9
0.88
0.7
81.3
35.7
Minor 5ss
39.3
-1.2
3
49
41.4
Minor BPS
63.3
0.5
2
80.42
41.9

Associated Gene:

Gene:
NCOA4
Ensembl Gene ID:
ENSAPLG00000013221
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013772
11527052 - 11534890
7839