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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11530428_11530642_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11530428 - 11530642
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCCTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTGTTTTTACT
Flanking Amino Acid:
TQKCVSEPSQDLSSPKVCYF
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
72.9
44.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.4
0.51
1
66.9
43.8
Minor 5ss
42.7
-0.8
3.4
65
46.3
Minor BPS
57.2
0.31
1.7
75.76
41.1

Associated Gene:

Gene:
NCOA4
Ensembl Gene ID:
ENSAPLG00000013221
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013772
11527052 - 11534890
7839