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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11530787_11531469_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11530787 - 11531469
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ACTTCCATAACC
Flanking Amino Acid:
QNFPLVNCEQKTLCGTVGAS
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.6
0.67
0.9
76
32.8
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
71.3
0.65
1.6
77.97
37.4

Associated Gene:

Gene:
NCOA4
Ensembl Gene ID:
ENSAPLG00000013221
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013772
11527052 - 11534890
7839