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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11532250_11532720_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11532250 - 11532720
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTCTGTAACT
Flanking Amino Acid:
LANQISVCLERLESLTLKPE
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
87.1
0.84
0.7
84.7
30
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
70.4
0.72
2
90.07
34.1

Associated Gene:

Gene:
NCOA4
Ensembl Gene ID:
ENSAPLG00000013221
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013772
11527052 - 11534890
7839