About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11532810_11532932_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11532810 - 11532932
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTAAT
U12 Branch Point Sequence:
AAAGCAGTAATG
Flanking Amino Acid:
LQQQAQQLYWYLGQFNCLIH
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.1
35.8
Major BPS
64.3
0.36
1.2
65.3
38.6
Major PPT
80.7
0.69
0.9
76.5
37.5
Minor 5ss
40.1
-1.1
3.1
49.7
46.1
Minor BPS
41.7
-0.7
2.2
44.95
41.2

Associated Gene:

Gene:
NCOA4
Ensembl Gene ID:
ENSAPLG00000013221
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013772
11527052 - 11534890
7839