About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_115564_115917_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115564 - 115917
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTTC
5'SS Class:
major
3'SS Sequence:
TGTGTATGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTGTGTATGT
Flanking Amino Acid:
LLSKLTEDKETLQYLQQNAK
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
76.1
34
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
72
0.49
1.1
65.3
44.7
Minor 5ss
47.2
-0.3
2.4
61.9
42.9
Minor BPS
42.3
-0.5
2.6
70.73
46.8

Associated Gene:

Gene:
TUBGCP2
Ensembl Gene ID:
ENSAPLG00000013602
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014248
85796 - 118596
32801