Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11571527_11571936_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11571527 - 11571936

Intron Length:

410

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTACTGTTT

5'SS Class:

major

3'SS Sequence:

CTGTCTTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTAAA

U12 Branch Point Sequence:

AGTAAGTAAATT

Flanking Amino Acid:

IPADWLNRSVVPSSDIMYST

Intron Amino Acid Position:

824

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

72.5

39.4

Major BPS

58.6

0.22

1.1

59.7

34.6

Major PPT

85.1

0.79

0.8

80.2

31.8

Minor 5ss

41.7

-0.9

3.6

64.7

46.6

Minor BPS

41.9

-0.5

2.3

60.81

42.8

Associated Gene:

Gene:

SHLD2

Ensembl Gene ID:

ENSAPLG00000013430

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013993

11571079 - 11585139

14061