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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11575741_11578153_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11575741 - 11578153
Intron Length:
2413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CAGAAATTAATC
Flanking Amino Acid:
AWCPQLQRRKGHLWDFKYLL
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.5
34.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.6
0.64
0.8
73.7
31.4
Minor 5ss
38.7
-1.3
3.4
56.7
47.6
Minor BPS
45.9
-0.3
1.8
50.57
39.8

Associated Gene:

Gene:
SHLD2
Ensembl Gene ID:
ENSAPLG00000013430
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013993
11571079 - 11585139
14061