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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11578289_11580353_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11578289 - 11580353
Intron Length:
2065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCAAACTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
ATGTCATAAATT
Flanking Amino Acid:
LKIVSIAILTESVYSYRGGS
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
72.1
0.5
1
61.9
43.8
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
56.1
0.27
1.9
75.36
41.7

Associated Gene:

Gene:
SHLD2
Ensembl Gene ID:
ENSAPLG00000013430
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013993
11571079 - 11585139
14061