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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11581465_11583665_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11581465 - 11583665
Intron Length:
2201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
CATTAATTGATG
Flanking Amino Acid:
VFPGDIVLLTDIMMYENLWY
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
92.5
0.96
0.6
85.6
29.1
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
47.5
-0.3
1.9
53.42
41.5

Associated Gene:

Gene:
SHLD2
Ensembl Gene ID:
ENSAPLG00000013430
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013993
11571079 - 11585139
14061