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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11616082_11616959_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11616082 - 11616959
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCTTA
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTATAG
Flanking Amino Acid:
GVKINPKNYTDNELEKITRR
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
69.1
38.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.9
0.81
0.7
81.1
30.2
Minor 5ss
49.6
-0
2.8
70.1
41.4
Minor BPS
64
0.3
1.8
72.46
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013478
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014092
11605042 - 11630882
25841