Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_11617024_11618219_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11617024 - 11618219

Intron Length:

1196

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTTGC

5'SS Class:

major

3'SS Sequence:

CTGTTGCCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAA

U12 Branch Point Sequence:

GGATCCCTAAAA

Flanking Amino Acid:

TMELAKKGFIGPGVDVPAPD

Intron Amino Acid Position:

205

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

67.6

38.6

Major BPS

60.4

0.26

1.1

61.5

32.5

Major PPT

0.41

62.4

38.7

Minor 5ss

46.8

-0.3

2.5

58.3

41.6

Minor BPS

54.7

0.15

1.8

64.76

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013478

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014092

11605042 - 11630882

25841